MGI (Mouse Genome Informatics)

The Gene Expression Profile Search has been Redesigned and Enhanced!

The GXD Expression Profile Search (https://www.informatics.jax.org/gxd/profile) is a tool to search for genes by their expression profile. We have redesigned and enhanced this utility to make it more versatile, improve its search speed, and include access to RNA-seq data.

More versatile searches: Users have always been able to define the expression profile of interest by specifying up to 10 anatomical structures and whether expression is present or absent in these structures. Now users can also specify the developmental (Theiler) stage(s) of interest. They can define search profiles based on developmental stages alone or they can use combinations of anatomical structures and developmental stages. The addition of this functionality to the profile search allowed us to retire the Differential Expression search as all its utilities (and more) are now available in the redesigned Expression Profile search. Read more: https://www.informatics.jax.org/mgihome/news/whatsnew.shtml .

Mouse Gene Expression Data Search You can restrict your query to specific Theiler Stages for each structure specified. You can also query for stages without specifying a structure. NOTE: that when you toggle this button, previous stage specifications (if any) are discarded.

Webinar: An Introduction to the Alliance

The Alliance of Genome Resources will present the first of a series of webinars of approximately 30 minutes.

On September 19, 2024. Noon EDT, Carol Bult will present An Introduction to the Alliance. This will cover searching the Alliance, Gene pages, and Disease pages, and will include a Q & A session.

Register here by September 18 to receive the Zoom URL:

Alliance Event Registration Please click the link to complete this form.

MGD 1.0 was released on the World Wide Web 30 years ago. Read more: https://www.informatics.jax.org/mgihome/news/whatsnew.shtml

We removed two features from Marker Detail pages:

We deleted the Interactions section with interacting microRNAs and its linked Interaction Explorer. Instead, for a marker's molecular and genetic interactions, follow the Alliance gene page link in the top, Summary section, of Marker Detail pages.

Also no longer present on Marker Detail pages are the GBrowse thumbnails of the marker region. These were found in the Location & Maps section and linked to JBrowse. The text link ("View this region in JBrowse") remains.